Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/4141b6cae5886c1f704720fe4c10eabe2a53d373content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 4141b6cae5886c1f704720fe4c10eabe2a53d373
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 4141b6cae5886c1f704720fe4c10eabe2a53d373
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2511_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CTCTCACAGGTCCTGA-2511_A02, TAGTGGCGTTACAAAC-2511_A02, AAGACCAAGTTATGTG-2511_A02, AACGACAAGTGAGGGT-2511_A02, GCTCACAAGATAACCC-2511_A02 (top 5 of 3001 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
113,990,144
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 113990144
chr1 9682545
chr2 9295082
chr3 7887764
chr4 6641054
chr5 6751755
chr6 6643922
chr7 6191003
chr8 5470248
chr9 4675454
chr10 5289485
chr11 5892068
chr12 5573519
chr13 3421283
chr14 3757494
chr15 3349726
chr16 3644164
chr17 4186295
chr18 2833902
chr19 3335621
chr20 2734713
chr21 1357333
chr22 1974041
chrX 3370454
chrY 8131
GL000009.2 886
GL000194.1 2081
GL000195.1 2377
GL000205.2 6488
GL000213.1 82
GL000218.1 1535
GL000219.1 6081
KI270711.1 246
KI270713.1 1455
KI270721.1 90
KI270726.1 13
KI270727.1 286
KI270728.1 1154
KI270731.1 99
KI270734.1 215

Fragment lengths

fragments min max mean median
fragments 113990144 1 5034 182.24 160
global fragment-length histogram

Files

Filename Size md5
4141b6cae5886c1f704720fe4c10eabe2a53d373.gz 1.14 GB 6c74a49c2f8600ccecfa059db3a43252
4141b6cae5886c1f704720fe4c10eabe2a53d373.gz.tbi 853.9 KB 864232795b64c217d98fadf6b9967aa5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a4796bca3ba0582efa97ba2bb8011d6c
statistics/