Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/42ad0f8f397baae5a90c26ad566b2161169f3496content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 42ad0f8f397baae5a90c26ad566b2161169f3496
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 42ad0f8f397baae5a90c26ad566b2161169f3496
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2328_B03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGCTACGTCGATTATG-2328_B03, GCAGGAAGTGTCCTGC-2328_B03, GCGGGTTTCCACCTGT-2328_B03, ATGAGCCGTTGTTGTC-2328_B03, TCGCTAACATAGTCAT-2328_B03 (top 5 of 3110 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
132,561,030
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 132561030
chr1 11800911
chr2 10310968
chr3 8609623
chr4 6859286
chr5 7416645
chr6 7370609
chr7 6938133
chr8 6099150
chr9 5667775
chr10 6187816
chr11 7110792
chr12 6438984
chr13 3629694
chr14 4371935
chr15 3936475
chr16 4607832
chr17 5700843
chr18 3128474
chr19 4971727
chr20 3416519
chr21 1519640
chr22 2630889
chrX 3792378
chrY 12109
GL000009.2 439
GL000194.1 2719
GL000195.1 3567
GL000205.2 6426
GL000213.1 42
GL000218.1 2014
GL000219.1 10956
KI270711.1 304
KI270713.1 1338
KI270721.1 41
KI270726.1 3
KI270727.1 324
KI270728.1 3299
KI270731.1 86
KI270734.1 265

Fragment lengths

fragments min max mean median
fragments 132561030 1 5039 188.38 164
global fragment-length histogram

Files

Filename Size md5
42ad0f8f397baae5a90c26ad566b2161169f3496.gz 1.23 GB 797a3db13429534dc892bec41b1982bb
42ad0f8f397baae5a90c26ad566b2161169f3496.gz.tbi 852.8 KB 1f68fc3014d6f8ff77a2e172d1c93b66
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 1b63b51935b94ec98cd7727432634f5a
statistics/