Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/43083f62ef1834bd80dd0a2710944da000b8abe9content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 43083f62ef1834bd80dd0a2710944da000b8abe9
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 43083f62ef1834bd80dd0a2710944da000b8abe9
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2263_B01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AAGACATAGGATTGAG-2263_B01, AGGGCTACATGATTGT-2263_B01, GATGAGGGTGTGAGAG-2263_B01, TCTATGTTCTAGCGAT-2263_B01, ATATAGGCAATTAGCT-2263_B01 (top 5 of 5927 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
319,829,037
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 319829037
chr1 28293228
chr2 24959772
chr3 20746934
chr4 16519290
chr5 17564820
chr6 17764469
chr7 16969897
chr8 14422354
chr9 13416587
chr10 14922041
chr11 17099235
chr12 15642889
chr13 8704689
chr14 10650748
chr15 9792520
chr16 11669271
chr17 13927383
chr18 7375448
chr19 12154632
chr20 8355916
chr21 3809114
chr22 6625376
chrX 8360072
chrY 17590
GL000009.2 1352
GL000194.1 11884
GL000195.1 9058
GL000205.2 15676
GL000213.1 188
GL000218.1 2717
GL000219.1 14017
KI270711.1 459
KI270713.1 4408
KI270721.1 341
KI270726.1 35
KI270727.1 706
KI270728.1 2958
KI270731.1 357
KI270734.1 606

Fragment lengths

fragments min max mean median
fragments 319829037 1 5038 191.74 165
global fragment-length histogram

Files

Filename Size md5
43083f62ef1834bd80dd0a2710944da000b8abe9.gz 2.96 GB 2c1892aaf5f1eae6d0154ca2088060f6
43083f62ef1834bd80dd0a2710944da000b8abe9.gz.tbi 1.31 MB 55b1d941fd9efffe68872a0fc8373de3
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB cd769f7aace1a2c923f0f41d70fe5ac4
statistics/