Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/445a4a879613ae396bfecfb7fd8832b9c4d014a0content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 445a4a879613ae396bfecfb7fd8832b9c4d014a0
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 445a4a879613ae396bfecfb7fd8832b9c4d014a0
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 988_C05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TGCTAGCCAGGCAAGC-988_C05, TTGCAGCCAAACCCTA-988_C05, CCCAAACCACTCAACA-988_C05, AGAGAGGAGCTCGCTT-988_C05, GGCTAGTGTGACATGC-988_C05 (top 5 of 2887 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
82,601,996
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 82601996
chr1 7582616
chr2 6331724
chr3 5273509
chr4 3904597
chr5 4411736
chr6 4413190
chr7 4234185
chr8 3678018
chr9 3634760
chr10 3938412
chr11 4525350
chr12 4026377
chr13 2119480
chr14 2780993
chr15 2582436
chr16 3087467
chr17 3982433
chr18 1808980
chr19 3335585
chr20 2305882
chr21 931900
chr22 1900664
chrX 1699794
chrY 98013
GL000009.2 242
GL000194.1 1305
GL000195.1 2378
GL000205.2 3837
GL000213.1 22
GL000218.1 867
GL000219.1 3086
KI270711.1 190
KI270713.1 847
KI270721.1 37
KI270726.1 7
KI270727.1 84
KI270728.1 637
KI270731.1 89
KI270734.1 267

Fragment lengths

fragments min max mean median
fragments 82601996 1 5039 170.75 160
global fragment-length histogram

Files

Filename Size md5
445a4a879613ae396bfecfb7fd8832b9c4d014a0.gz 804.03 MB f2b52c3bf2900b8ae406400f161319f1
445a4a879613ae396bfecfb7fd8832b9c4d014a0.gz.tbi 713.36 KB 883c9c6ee0984f31dd4cb062d67864e8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB de331f14e4bb736c02777375f26cdfc5
statistics/