Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/45f1425ec9e97b7f278b6308116a90a77d2e82edcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 45f1425ec9e97b7f278b6308116a90a77d2e82ed
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 45f1425ec9e97b7f278b6308116a90a77d2e82ed
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2305_B01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TAAGGACCATAAAGCA-2305_B01, ATGCTTAAGCTTTGTT-2305_B01, TTCCTTGAGGGCCACT-2305_B01, TTGGCTGAGGGCTTTG-2305_B01, ACGAGTAAGTAACTCA-2305_B01 (top 5 of 752 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
70,217,498
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 70217498
chr1 6172219
chr2 5518199
chr3 4636706
chr4 3697805
chr5 3945025
chr6 3952633
chr7 3790287
chr8 3183642
chr9 2857160
chr10 3262750
chr11 3706640
chr12 3462284
chr13 1881943
chr14 2372182
chr15 2145797
chr16 2560601
chr17 2959000
chr18 1624879
chr19 2613659
chr20 1806006
chr21 809992
chr22 1398520
chrX 1835072
chrY 4610
GL000009.2 161
GL000194.1 1707
GL000195.1 1917
GL000205.2 4946
GL000213.1 21
GL000218.1 1284
GL000219.1 7032
KI270711.1 127
KI270713.1 678
KI270721.1 25
KI270726.1 4
KI270727.1 106
KI270728.1 1678
KI270731.1 66
KI270734.1 135

Fragment lengths

fragments min max mean median
fragments 70217498 1 5025 225.28 185
global fragment-length histogram

Files

Filename Size md5
45f1425ec9e97b7f278b6308116a90a77d2e82ed.gz 618.71 MB 2d5bfed036c5077b3942a72a7b35d832
45f1425ec9e97b7f278b6308116a90a77d2e82ed.gz.tbi 678.64 KB 775ffaed3216f26576e35fe27be95faf
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f2a0730631b41a64730630e038d01f6b
statistics/