Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/47bf8a189bae02dcffab92fa51b64ae2cb52d31ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 47bf8a189bae02dcffab92fa51b64ae2cb52d31c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 47bf8a189bae02dcffab92fa51b64ae2cb52d31c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2448_A07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ATTGCACAGTCACGAT-2448_A07, GCACGCTAGTTTCCGC-2448_A07, GTGTGCGGTGGTGAGA-2448_A07, AGTGCACGTCAACAAT-2448_A07, TGGACTAGTCACCAAA-2448_A07 (top 5 of 4597 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
185,247,954
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 185247954
chr1 16570677
chr2 14559618
chr3 12068092
chr4 9530465
chr5 10171798
chr6 10252426
chr7 9909443
chr8 8443483
chr9 7877983
chr10 8654632
chr11 9797889
chr12 9084736
chr13 5096305
chr14 6262902
chr15 5745487
chr16 6732857
chr17 8090599
chr18 4250686
chr19 6948339
chr20 4904838
chr21 2219713
chr22 3836196
chrX 3909215
chrY 290079
GL000009.2 1482
GL000194.1 3320
GL000195.1 4216
GL000205.2 9744
GL000213.1 9
GL000218.1 4025
GL000219.1 11208
KI270711.1 607
KI270713.1 3026
KI270721.1 165
KI270726.1 30
KI270727.1 227
KI270728.1 512
KI270731.1 127
KI270734.1 798

Fragment lengths

fragments min max mean median
fragments 185247954 1 5036 165.44 152
global fragment-length histogram

Files

Filename Size md5
47bf8a189bae02dcffab92fa51b64ae2cb52d31c.gz 1.76 GB f7659d845dc4d877ac45ac8bbd5ffb3f
47bf8a189bae02dcffab92fa51b64ae2cb52d31c.gz.tbi 1002.35 KB 8a9dc4bb401941ee59b991b29c67d094
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 005f95ccfdc95901a9022218a64bd58d
statistics/