Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2058_B03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GAACCTTAGTAGCTTA-2058_B03, ACGACAAAGTAAGTGG-2058_B03, GCCTTAGAGGTTAGAG-2058_B03, ACGCCTAAGAGAGCCG-2058_B03, CCGCTAGCACCTATAG-2058_B03 (top 5 of 4969 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
114,900,185
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 114900185
chr1 10614564
chr2 8733497
chr3 7046781
chr4 5474003
chr5 6023200
chr6 6298515
chr7 5835489
chr8 4869418
chr9 5141964
chr10 5426020
chr11 6206759
chr12 5498730
chr13 3006916
chr14 3850165
chr15 3542787
chr16 4356903
chr17 5557413
chr18 2545498
chr19 5376976
chr20 3050950
chr21 1433832
chr22 2419071
chrX 2402486
chrY 158645
GL000009.2 714
GL000194.1 2826
GL000195.1 5728
GL000205.2 6408
GL000213.1 10
GL000218.1 798
GL000219.1 5137
KI270711.1 180
KI270713.1 5018
KI270721.1 117
KI270726.1 123
KI270727.1 417
KI270728.1 1869
KI270731.1 43
KI270734.1 215

Fragment lengths

fragments min max mean median
fragments 114900185 1 5039 173.35 147
global fragment-length histogram

Files

Filename Size md5
4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3.gz 1.06 GB 55418525e252b15e8b67ebbdf9f760c9
4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3.gz.tbi 798.72 KB c57e250148a21715fe6774e8f0b34937
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 21041d66f5d60eb6441ccbcf2b937beb
statistics/