Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/488a55e190504b0a3f41fa3c77e8539ebf9c97b6content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 488a55e190504b0a3f41fa3c77e8539ebf9c97b6
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 488a55e190504b0a3f41fa3c77e8539ebf9c97b6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2551_1_F01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TGAGTGAAGCTTAGTA-2551_1_F01, CTGGCTAAGTTCCCAC-2551_1_F01, ACAAAGGTCGTTAGTA-2551_1_F01, TGGTCAAGTTGTAAAC-2551_1_F01, GGTGTTGTCAGGGCCT-2551_1_F01 (top 5 of 2235 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
75,617,228
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 75617228
chr1 6844021
chr2 5874413
chr3 4830651
chr4 3714291
chr5 4039498
chr6 4217634
chr7 3873252
chr8 3349081
chr9 3303367
chr10 3675186
chr11 4039798
chr12 3592531
chr13 2019541
chr14 2528280
chr15 2317364
chr16 2694255
chr17 3416946
chr18 1739840
chr19 2990267
chr20 2003402
chr21 924967
chr22 1558869
chrX 2044128
chrY 7002
GL000009.2 726
GL000194.1 1645
GL000195.1 2075
GL000205.2 4754
GL000213.1 71
GL000218.1 1268
GL000219.1 4446
KI270711.1 257
KI270713.1 1622
KI270721.1 112
KI270726.1 6
KI270727.1 366
KI270728.1 1061
KI270731.1 47
KI270734.1 188

Fragment lengths

fragments min max mean median
fragments 75617228 1 5038 158.79 133
global fragment-length histogram

Files

Filename Size md5
488a55e190504b0a3f41fa3c77e8539ebf9c97b6.gz 731.44 MB 9c36bb5fed95dc54de6f37e5b6f8d2db
488a55e190504b0a3f41fa3c77e8539ebf9c97b6.gz.tbi 702.71 KB 388c303ab68525987f28ec1481ba7ab5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 1ec7bfcfc2b6eca4aac65fd7649242b6
statistics/