Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/499451f82ed33e14bde0f96849d3210c04da3137content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 499451f82ed33e14bde0f96849d3210c04da3137
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 499451f82ed33e14bde0f96849d3210c04da3137
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1110_B07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTTCTTGCACAGGGAC-1110_B07, ACGGTACGTGCGCATG-1110_B07, GGTATTTCAATACTGT-1110_B07, GTTTCAGCAAGGTCCT-1110_B07, TGTCATAAGGGATGCG-1110_B07 (top 5 of 1700 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
39,149,403
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 39149403
chr1 3491593
chr2 3080064
chr3 2559863
chr4 2016200
chr5 2146177
chr6 2135360
chr7 2063892
chr8 1782266
chr9 1615009
chr10 1824513
chr11 2063491
chr12 1910396
chr13 1080895
chr14 1311165
chr15 1208828
chr16 1418801
chr17 1684447
chr18 892486
chr19 1466711
chr20 1056277
chr21 461509
chr22 802268
chrX 1063466
chrY 2785
GL000009.2 312
GL000194.1 934
GL000195.1 1443
GL000205.2 2481
GL000213.1 27
GL000218.1 663
GL000219.1 3215
KI270711.1 80
KI270713.1 750
KI270721.1 16
KI270726.1 27
KI270727.1 69
KI270728.1 778
KI270731.1 69
KI270734.1 77

Fragment lengths

fragments min max mean median
fragments 39149403 1 5034 190.86 162
global fragment-length histogram

Files

Filename Size md5
499451f82ed33e14bde0f96849d3210c04da3137.gz 386.64 MB ee07b4db2c9619336ec6cfa4c1de94e7
499451f82ed33e14bde0f96849d3210c04da3137.gz.tbi 595.39 KB 2cf590f76105fc81238c01a66c9df332
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 9451b0146dfcfd17a56023d790d83c2e
statistics/