Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/4e40ad6f1d330bc0aa32290a1e30e9159d3701c3content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 4e40ad6f1d330bc0aa32290a1e30e9159d3701c3
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 4e40ad6f1d330bc0aa32290a1e30e9159d3701c3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2317_B05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCGGTTAAGGCTGTGC-2317_B05, GAATTTGTCCCGTTAC-2317_B05, CGAAGCCTCCGCACAA-2317_B05, AGTCAAGAGGGATGCG-2317_B05, TATCCAGCACTAGCGT-2317_B05 (top 5 of 5722 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
294,175,754
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 294175754
chr1 25434373
chr2 23251618
chr3 19350158
chr4 16046388
chr5 16803479
chr6 16510528
chr7 15731025
chr8 13773461
chr9 12028014
chr10 13492754
chr11 15381940
chr12 14227717
chr13 8296550
chr14 9668860
chr15 8630237
chr16 10266726
chr17 11939227
chr18 6954067
chr19 10559436
chr20 7434814
chr21 3415502
chr22 5598880
chrX 9269708
chrY 27862
GL000009.2 1062
GL000194.1 7167
GL000195.1 8421
GL000205.2 19445
GL000213.1 95
GL000218.1 5390
GL000219.1 27265
KI270711.1 603
KI270713.1 2900
KI270721.1 141
KI270726.1 17
KI270727.1 505
KI270728.1 8683
KI270731.1 202
KI270734.1 534

Fragment lengths

fragments min max mean median
fragments 294175754 1 5039 177.23 157
global fragment-length histogram

Files

Filename Size md5
4e40ad6f1d330bc0aa32290a1e30e9159d3701c3.gz 2.73 GB 92ca9e35be9fd4cce9dec9f2f160f16f
4e40ad6f1d330bc0aa32290a1e30e9159d3701c3.gz.tbi 1.3 MB 55a92db18a6db2b61854d4ffb4e02948
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 0deec35c25daa13d7c081e6f34d70f77
statistics/