Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5184c19b9f90b2d0329ec6d7e4ba3febe51999eecontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 5184c19b9f90b2d0329ec6d7e4ba3febe51999ee
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5184c19b9f90b2d0329ec6d7e4ba3febe51999ee
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 897_E03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTTCCTGAGGCATTGT-897_E03, CGGCCATAGAGGAAGG-897_E03, ATCCAACAGGTTTACA-897_E03, TGAGGCACAGGCTAGA-897_E03, TGAGGAGGTTTGGCGG-897_E03 (top 5 of 1146 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
25,804,673
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 25804673
chr1 2357905
chr2 2008402
chr3 1657641
chr4 1240901
chr5 1380574
chr6 1389532
chr7 1322748
chr8 1142759
chr9 1123790
chr10 1242341
chr11 1421326
chr12 1241985
chr13 655880
chr14 857525
chr15 815944
chr16 957139
chr17 1230863
chr18 574021
chr19 1023615
chr20 716064
chr21 286512
chr22 599852
chrX 519558
chrY 33482
GL000009.2 88
GL000194.1 499
GL000195.1 703
GL000205.2 1181
GL000213.1 5
GL000218.1 320
GL000219.1 838
KI270711.1 47
KI270713.1 202
KI270721.1 18
KI270726.1 1
KI270727.1 33
KI270728.1 273
KI270731.1 26
KI270734.1 80

Fragment lengths

fragments min max mean median
fragments 25804673 1 5040 215.56 179
global fragment-length histogram

Files

Filename Size md5
5184c19b9f90b2d0329ec6d7e4ba3febe51999ee.gz 251.29 MB 88880eb3056423d6bdc73dc55a41f4d5
5184c19b9f90b2d0329ec6d7e4ba3febe51999ee.gz.tbi 565.25 KB ea4819d64324fc1f50ad8d025e970467
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 0bf760de589849bf9a55555cb40fca27
statistics/