Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/556d7ee7e925c7b5a13b3535f1af1bcc150c95d6content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 556d7ee7e925c7b5a13b3535f1af1bcc150c95d6
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 556d7ee7e925c7b5a13b3535f1af1bcc150c95d6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2526_F01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GCAGGCAAGCGAGCGA-2526_F01, CGTAATGGTGTTTCAC-2526_F01, CACGCTAAGTAGGCGG-2526_F01, TTTGTCCCACCTGGTG-2526_F01, CTTGGACCAACGTGCT-2526_F01 (top 5 of 2271 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
105,654,461
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 105654461
chr1 9295584
chr2 8208683
chr3 6930968
chr4 5606571
chr5 5848793
chr6 5800464
chr7 5613485
chr8 4811813
chr9 4459434
chr10 4935318
chr11 5561449
chr12 5076604
chr13 2925416
chr14 3512752
chr15 3262460
chr16 3806223
chr17 4489944
chr18 2483887
chr19 3833019
chr20 2760639
chr21 1280654
chr22 2184324
chrX 2930669
chrY 10242
GL000009.2 962
GL000194.1 2202
GL000195.1 2417
GL000205.2 7165
GL000213.1 91
GL000218.1 1647
GL000219.1 6216
KI270711.1 319
KI270713.1 1536
KI270721.1 124
KI270726.1 10
KI270727.1 398
KI270728.1 1590
KI270731.1 96
KI270734.1 293

Fragment lengths

fragments min max mean median
fragments 105654461 1 5035 189.21 160
global fragment-length histogram

Files

Filename Size md5
556d7ee7e925c7b5a13b3535f1af1bcc150c95d6.gz 1.01 GB b31905e5aa713ce3896015fc2952e73d
556d7ee7e925c7b5a13b3535f1af1bcc150c95d6.gz.tbi 788.96 KB 2634c9e4e689b7813f133f9b6c880c6b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB c84819f70604f1e7f4c9e62cba48f628
statistics/