Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/55893d95a1ca5a1f0479012080977721143d886ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 55893d95a1ca5a1f0479012080977721143d886c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 55893d95a1ca5a1f0479012080977721143d886c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2309_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CAGCCTAAGCGCCTTT-2309_A05, TGTGGCGGTGAATCGC-2309_A05, TGAGCTTAGCTGTAAC-2309_A05, AGCCTAAGTGGTGAGA-2309_A05, AAGTGTTGTGTTGCTT-2309_A05 (top 5 of 3232 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
219,650,792
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 219650792
chr1 19454363
chr2 17324432
chr3 14375412
chr4 11455938
chr5 12239074
chr6 12279244
chr7 11759077
chr8 9886228
chr9 9038374
chr10 10294186
chr11 11580264
chr12 10732771
chr13 5997820
chr14 7353897
chr15 6819167
chr16 7971866
chr17 9360354
chr18 5124472
chr19 8032246
chr20 5760748
chr21 2542616
chr22 4397409
chrX 5804108
chrY 12094
GL000009.2 427
GL000194.1 4707
GL000195.1 5142
GL000205.2 13080
GL000213.1 61
GL000218.1 3429
GL000219.1 19838
KI270711.1 481
KI270713.1 1988
KI270721.1 89
KI270726.1 8
KI270727.1 337
KI270728.1 4545
KI270731.1 141
KI270734.1 359

Fragment lengths

fragments min max mean median
fragments 219650792 1 5036 189.02 166
global fragment-length histogram

Files

Filename Size md5
55893d95a1ca5a1f0479012080977721143d886c.gz 2.04 GB 38f7b8858afc9b4d953f7b8c2f7ed92c
55893d95a1ca5a1f0479012080977721143d886c.gz.tbi 1.06 MB 26c5e2a601cbb55394831e4d893a0c6f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB bd30d5028ec0f2bf6731c7bc1b906141
statistics/