Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5592d985f92f35cc036bc2afe2cf1e33048a96a5content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 5592d985f92f35cc036bc2afe2cf1e33048a96a5
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5592d985f92f35cc036bc2afe2cf1e33048a96a5
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2526_B01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CACATACAGCTTATGA-2526_B01, CGATGTCCAGCACGAA-2526_B01, TCGGTAAGTGATCAGC-2526_B01, GTGTTACAGACAAGTG-2526_B01, AATGAAGGTTGAGGTC-2526_B01 (top 5 of 2743 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
144,386,368
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 144386368
chr1 12721818
chr2 11337486
chr3 9565303
chr4 7623916
chr5 8044124
chr6 7978658
chr7 7764943
chr8 6593192
chr9 5999081
chr10 6737502
chr11 7616612
chr12 7013040
chr13 3983390
chr14 4821834
chr15 4488573
chr16 5202846
chr17 6063904
chr18 3363224
chr19 5129081
chr20 3761915
chr21 1693076
chr22 2965508
chrX 3876128
chrY 10086
GL000009.2 1050
GL000194.1 2844
GL000195.1 3015
GL000205.2 8579
GL000213.1 94
GL000218.1 1954
GL000219.1 8479
KI270711.1 355
KI270713.1 2025
KI270721.1 142
KI270726.1 13
KI270727.1 460
KI270728.1 1600
KI270731.1 136
KI270734.1 382

Fragment lengths

fragments min max mean median
fragments 144386368 1 5033 194.86 167
global fragment-length histogram

Files

Filename Size md5
5592d985f92f35cc036bc2afe2cf1e33048a96a5.gz 1.38 GB 997fa9b4326eb962bffe5d5d56d8b9c1
5592d985f92f35cc036bc2afe2cf1e33048a96a5.gz.tbi 908.41 KB 1f4504240953c7c6df0c92b0efb7a9f5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f3acd015d610fe211c165a50293a84dd
statistics/