Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/55cd6052b5639a1c00d78434c0603fa2ad61df23content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 55cd6052b5639a1c00d78434c0603fa2ad61df23
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 55cd6052b5639a1c00d78434c0603fa2ad61df23
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1959_B02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ATCCATAAGTCATTTC-1959_B02, AAGCGAGGTACCTTAC-1959_B02, AGCCAGTGTGCCGCAA-1959_B02, TCTTGACGTTAGACCA-1959_B02, CGTGTGTCAAATGCCC-1959_B02 (top 5 of 7108 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
232,201,496
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 232201496
chr1 21037574
chr2 17761976
chr3 14478510
chr4 11279378
chr5 12309070
chr6 12614932
chr7 12192023
chr8 10192285
chr9 9875994
chr10 10774229
chr11 12556219
chr12 11378073
chr13 6037109
chr14 7830199
chr15 7184230
chr16 8978735
chr17 10941208
chr18 5066561
chr19 10456028
chr20 6257614
chr21 2788147
chr22 5111009
chrX 4735867
chrY 311218
GL000009.2 1042
GL000194.1 6659
GL000195.1 10215
GL000205.2 12670
GL000213.1 28
GL000218.1 1863
GL000219.1 7640
KI270711.1 226
KI270713.1 8244
KI270721.1 308
KI270726.1 214
KI270727.1 707
KI270728.1 2565
KI270731.1 124
KI270734.1 803

Fragment lengths

fragments min max mean median
fragments 232201496 1 5039 145.23 129
global fragment-length histogram

Files

Filename Size md5
55cd6052b5639a1c00d78434c0603fa2ad61df23.gz 2.14 GB 3d9f63733762b3da4ad3d2f242c7d4e8
55cd6052b5639a1c00d78434c0603fa2ad61df23.gz.tbi 1.08 MB fdffdb52cf6edb126da8c3babd5a0b15
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b331531c497139f8a2d1200f552af415
statistics/