Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5970e5a0d94e4832c611c2d03625eb1c7a206153content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 5970e5a0d94e4832c611c2d03625eb1c7a206153
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5970e5a0d94e4832c611c2d03625eb1c7a206153
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2263_D01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTTCTCATCGCAAACT-2263_D01, AGTAACGAGTAAGTGG-2263_D01, GCACATTAGGCACAGG-2263_D01, CAAAGGATCAAACTCA-2263_D01, ACTTGTAAGGGACTAA-2263_D01 (top 5 of 2227 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
128,074,692
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 128074692
chr1 11513790
chr2 9884940
chr3 8164101
chr4 6352314
chr5 6818499
chr6 7052987
chr7 6670070
chr8 5674468
chr9 5552784
chr10 6077994
chr11 6873256
chr12 6123940
chr13 3418787
chr14 4286838
chr15 3983283
chr16 4743933
chr17 5811647
chr18 2904159
chr19 5045550
chr20 3405040
chr21 1551942
chr22 2720243
chrX 3404849
chrY 10529
GL000009.2 743
GL000194.1 4865
GL000195.1 4212
GL000205.2 7337
GL000213.1 99
GL000218.1 1259
GL000219.1 5601
KI270711.1 298
KI270713.1 1936
KI270721.1 158
KI270726.1 13
KI270727.1 383
KI270728.1 1399
KI270731.1 185
KI270734.1 261

Fragment lengths

fragments min max mean median
fragments 128074692 1 5032 160.7 146
global fragment-length histogram

Files

Filename Size md5
5970e5a0d94e4832c611c2d03625eb1c7a206153.gz 1.18 GB 4c886b56425160f9aa8931b91d3d38ef
5970e5a0d94e4832c611c2d03625eb1c7a206153.gz.tbi 835.67 KB 629df01ca78aa9b2920e7305df29ed60
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b85457563dcaeb6d6b7b9579e7a7bf4b
statistics/