Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/599da4d158ff8c9ee569d6494c11e5945ad30310content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 599da4d158ff8c9ee569d6494c11e5945ad30310
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 599da4d158ff8c9ee569d6494c11e5945ad30310
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2474_C05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGCGGTTTCTTAGTCT-2474_C05, GTATTGTCACCAACCG-2474_C05, TCGGTTCTCTAAGGTC-2474_C05, GGTTAGCGTTGCGCGA-2474_C05, GTACACCCAAATTCGT-2474_C05 (top 5 of 4909 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
176,648,277
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 176648277
chr1 16189655
chr2 13689782
chr3 11192714
chr4 8575462
chr5 9439591
chr6 9638782
chr7 9182336
chr8 7769238
chr9 7782864
chr10 8483111
chr11 9533559
chr12 8452854
chr13 4655038
chr14 5935376
chr15 5575962
chr16 6593609
chr17 8257082
chr18 3914784
chr19 7152321
chr20 4820287
chr21 2051965
chr22 3835138
chrX 3645209
chrY 243854
GL000009.2 1281
GL000194.1 2950
GL000195.1 4447
GL000205.2 9261
GL000213.1 4
GL000218.1 3420
GL000219.1 10194
KI270711.1 736
KI270713.1 3747
KI270721.1 162
KI270726.1 24
KI270727.1 236
KI270728.1 480
KI270731.1 114
KI270734.1 648

Fragment lengths

fragments min max mean median
fragments 176648277 1 5033 186.85 159
global fragment-length histogram

Files

Filename Size md5
599da4d158ff8c9ee569d6494c11e5945ad30310.gz 1.67 GB ef5db70b47d1ccb0981d5a37f285d672
599da4d158ff8c9ee569d6494c11e5945ad30310.gz.tbi 975.58 KB ca36f6ca722cd72f2d337e89ad6ed052
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 3d355e13d86002d95ffaa6d99784ea77
statistics/