Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5a8e588147c0131ac4ce05e5c60022a277062572content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 5a8e588147c0131ac4ce05e5c60022a277062572
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5a8e588147c0131ac4ce05e5c60022a277062572
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2459_C05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CTCTAAGCACCTCACC-2459_C05, GAGCTTAGTGTTTGAG-2459_C05, CGACCTGCATTATGGT-2459_C05, GGTGAGGTCACAGACT-2459_C05, GGTCTTTGTTAGAGGG-2459_C05 (top 5 of 5393 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
243,217,472
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 243217472
chr1 21752536
chr2 19044901
chr3 15725132
chr4 12392457
chr5 13334791
chr6 13461471
chr7 12898800
chr8 11059176
chr9 10217923
chr10 11454309
chr11 12910265
chr12 11824806
chr13 6742726
chr14 8183611
chr15 7627057
chr16 8991704
chr17 10616809
chr18 5581871
chr19 9275709
chr20 6519367
chr21 2956095
chr22 5079125
chrX 5125692
chrY 384799
GL000009.2 2030
GL000194.1 4445
GL000195.1 5673
GL000205.2 14141
GL000213.1 7
GL000218.1 5382
GL000219.1 16597
KI270711.1 795
KI270713.1 4770
KI270721.1 190
KI270726.1 27
KI270727.1 347
KI270728.1 790
KI270731.1 183
KI270734.1 963

Fragment lengths

fragments min max mean median
fragments 243217472 1 5040 177.77 152
global fragment-length histogram

Files

Filename Size md5
5a8e588147c0131ac4ce05e5c60022a277062572.gz 2.28 GB a1523c2405dbd45a4938796c5b4883a1
5a8e588147c0131ac4ce05e5c60022a277062572.gz.tbi 1.15 MB bdc5cb7c6bf3e114db2fa9afbc416b9d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB e9ab81a7c04d45926af3ebdfb6d467f8
statistics/