Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 930_F05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CAGCTCAAGGCCTAAT-930_F05, ATGTGAGAGTCCTTCA-930_F05, GGCTCAATCGATTTAG-930_F05, TGGAACAAGGTCGATT-930_F05, AGGCCCAGTCATGCCC-930_F05 (top 5 of 3754 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
235,989,936
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 235989936
chr1 20751676
chr2 18934152
chr3 15774659
chr4 12734993
chr5 13574877
chr6 13357854
chr7 12882667
chr8 10934558
chr9 9620067
chr10 10932219
chr11 12503010
chr12 11840092
chr13 6495231
chr14 7942896
chr15 7167837
chr16 8219216
chr17 9722623
chr18 5563672
chr19 8194806
chr20 6064448
chr21 2674880
chr22 4739374
chrX 5040849
chrY 268253
GL000009.2 511
GL000194.1 7398
GL000195.1 5706
GL000205.2 9949
GL000213.1 126
GL000218.1 2728
GL000219.1 19545
KI270711.1 371
KI270713.1 3090
KI270721.1 108
KI270726.1 402
KI270727.1 414
KI270728.1 3851
KI270731.1 306
KI270734.1 522

Fragment lengths

fragments min max mean median
fragments 235989936 1 5039 192.51 168
global fragment-length histogram

Files

Filename Size md5
5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0.gz 2.2 GB 646a4447fba5472d041abaa5818a92bf
5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0.gz.tbi 1.08 MB a67e4772d43722b5c27858b82a6074a8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB d3416ed37ddbfe62778aa1f9fefdb2d9
statistics/