Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5c2ad0c0b8a218360c36908d422ed46a85ba1537content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 5c2ad0c0b8a218360c36908d422ed46a85ba1537
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5c2ad0c0b8a218360c36908d422ed46a85ba1537
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2317_C05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTTGTTGCACCTCACC-2317_C05, GGCTCAATCCTTGCGT-2317_C05, GCCTTAACAAAGGCCA-2317_C05, TAGCAGGCAAGCCAGA-2317_C05, ACCTACCTCTACCTGC-2317_C05 (top 5 of 5916 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
267,295,435
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 267295435
chr1 23457343
chr2 21070733
chr3 17477774
chr4 14184697
chr5 15059191
chr6 14954844
chr7 14356860
chr8 12203342
chr9 10919986
chr10 12360202
chr11 14134825
chr12 13054476
chr13 7341224
chr14 8914640
chr15 8110017
chr16 9612715
chr17 11132873
chr18 6216882
chr19 9896311
chr20 6852626
chr21 3127459
chr22 5245133
chrX 7517462
chrY 18893
GL000009.2 662
GL000194.1 6557
GL000195.1 7207
GL000205.2 18874
GL000213.1 74
GL000218.1 4640
GL000219.1 26280
KI270711.1 527
KI270713.1 2740
KI270721.1 146
KI270726.1 13
KI270727.1 402
KI270728.1 6141
KI270731.1 203
KI270734.1 461

Fragment lengths

fragments min max mean median
fragments 267295435 1 5040 178.56 157
global fragment-length histogram

Files

Filename Size md5
5c2ad0c0b8a218360c36908d422ed46a85ba1537.gz 2.5 GB b51def712fb893713579e330b4db03e4
5c2ad0c0b8a218360c36908d422ed46a85ba1537.gz.tbi 1.21 MB 86790386c73e007c1e51ec8139216416
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 2e012a1726605a4dbdd0e583a3aa77c3
statistics/