Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5c617007c7f35281a27ac0a39e4bc01cd57ff121content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 5c617007c7f35281a27ac0a39e4bc01cd57ff121
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5c617007c7f35281a27ac0a39e4bc01cd57ff121
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2012_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGTTGCAAGTCCTGAG-2012_A05, TCTAGCACAATAGCCC-2012_A05, CGGTGAGAGCCACAAT-2012_A05, CGTGGTTCAGGAATCG-2012_A05, GTTTCAGCAAGGTGGC-2012_A05 (top 5 of 6607 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
227,034,812
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 227034812
chr1 20906459
chr2 17439814
chr3 14194824
chr4 10758619
chr5 11997911
chr6 12440644
chr7 11610732
chr8 9780129
chr9 10071456
chr10 10878940
chr11 12384846
chr12 10910639
chr13 5854278
chr14 7611129
chr15 7138271
chr16 8556975
chr17 10965669
chr18 4977587
chr19 9737470
chr20 6228831
chr21 2717909
chr22 4893119
chrX 4647526
chrY 284302
GL000009.2 999
GL000194.1 4773
GL000195.1 8643
GL000205.2 11060
GL000213.1 15
GL000218.1 1303
GL000219.1 7487
KI270711.1 292
KI270713.1 7560
KI270721.1 240
KI270726.1 200
KI270727.1 654
KI270728.1 2809
KI270731.1 89
KI270734.1 609

Fragment lengths

fragments min max mean median
fragments 227034812 1 5029 169.59 153
global fragment-length histogram

Files

Filename Size md5
5c617007c7f35281a27ac0a39e4bc01cd57ff121.gz 2.11 GB 1762aa4da68b564a606f02ebc3179cdb
5c617007c7f35281a27ac0a39e4bc01cd57ff121.gz.tbi 1.07 MB c3f4d4388829dcb7bc0fdaa70f412c83
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB ab3cb14ae7b3f1eee67077b42ac9eebc
statistics/