Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5d3a24ec949440de4152c0d8fdd30f03db6e9289content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 5d3a24ec949440de4152c0d8fdd30f03db6e9289
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5d3a24ec949440de4152c0d8fdd30f03db6e9289
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2346_C06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGCGCCTAGACACTTA-2346_C06, GGATTGCGTGTTAAAC-2346_C06, CGATTTGCAGTACCGT-2346_C06, ATCCAACAGTAGCGGG-2346_C06, AAGTTAGCAAGGAATC-2346_C06 (top 5 of 5186 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
205,213,964
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 205213964
chr1 18385753
chr2 15805272
chr3 13208101
chr4 10585160
chr5 11290998
chr6 11315453
chr7 10943620
chr8 9212618
chr9 8578957
chr10 9568220
chr11 10824727
chr12 9982719
chr13 5571089
chr14 6894439
chr15 6413494
chr16 7773018
chr17 9094701
chr18 4648337
chr19 8274393
chr20 5453774
chr21 2459698
chr22 4290041
chrX 4310145
chrY 286611
GL000009.2 692
GL000194.1 4223
GL000195.1 6908
GL000205.2 13184
GL000213.1 56
GL000218.1 1705
GL000219.1 9448
KI270711.1 497
KI270713.1 4267
KI270721.1 187
KI270726.1 38
KI270727.1 140
KI270728.1 628
KI270731.1 169
KI270734.1 484

Fragment lengths

fragments min max mean median
fragments 205213964 1 5040 170.13 154
global fragment-length histogram

Files

Filename Size md5
5d3a24ec949440de4152c0d8fdd30f03db6e9289.gz 1.91 GB 48d709120360eb248e83c939c2610959
5d3a24ec949440de4152c0d8fdd30f03db6e9289.gz.tbi 1.03 MB 0913add589d3ba3397e438bd11b5a7cc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB d798d25c0fa23a300ed523a977160584
statistics/