Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/6127719df1cbc42f0004604734d2d4ffea81b061content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 6127719df1cbc42f0004604734d2d4ffea81b061
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 6127719df1cbc42f0004604734d2d4ffea81b061
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 925_F03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCGACAAGTGATCAGC-925_F03, AATAGCTGTTGCTGGG-925_F03, GTCGAAGCAGAACCGA-925_F03, TTAGACTCATCTAGCA-925_F03, AAGCTTGGTGTTTGTC-925_F03 (top 5 of 1776 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
27,700,783
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 27700783
chr1 2451591
chr2 2170513
chr3 1795808
chr4 1432308
chr5 1553074
chr6 1553356
chr7 1426545
chr8 1289484
chr9 1189675
chr10 1302604
chr11 1457042
chr12 1331529
chr13 770982
chr14 914450
chr15 846127
chr16 955819
chr17 1195474
chr18 648721
chr19 1013895
chr20 717174
chr21 323838
chr22 555325
chrX 796027
chrY 2457
GL000009.2 261
GL000194.1 527
GL000195.1 916
GL000205.2 1412
GL000213.1 19
GL000218.1 460
GL000219.1 1837
KI270711.1 67
KI270713.1 593
KI270721.1 17
KI270726.1 23
KI270727.1 72
KI270728.1 654
KI270731.1 39
KI270734.1 68

Fragment lengths

fragments min max mean median
fragments 27700783 1 5042 144 131
global fragment-length histogram

Files

Filename Size md5
6127719df1cbc42f0004604734d2d4ffea81b061.gz 279.57 MB 4212002a99b8a4ad91c1a53599799423
6127719df1cbc42f0004604734d2d4ffea81b061.gz.tbi 573.58 KB c101951a582c298a994998cac7b1af23
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 046417a5196c1dd57c3634054061e54b
statistics/