Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/63a8f06d5fb7ddfdbd3541dd984c53fb208f902acontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 63a8f06d5fb7ddfdbd3541dd984c53fb208f902a
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 63a8f06d5fb7ddfdbd3541dd984c53fb208f902a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2016_C03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GAACCTGTCATTACAG-2016_C03, GCTCCTTAGCTTCTCA-2016_C03, GGTATTTCACGTAATT-2016_C03, GATAAAGGTGAGGTGA-2016_C03, TATGCATCACCAGGTT-2016_C03 (top 5 of 7211 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
321,634,189
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 321634189
chr1 28529921
chr2 24975781
chr3 20823077
chr4 16486869
chr5 17723456
chr6 17770593
chr7 17188648
chr8 14504116
chr9 13289097
chr10 14802669
chr11 17082521
chr12 15985444
chr13 8766432
chr14 10954107
chr15 9946765
chr16 11959340
chr17 14148935
chr18 7277725
chr19 12942247
chr20 8542260
chr21 3847368
chr22 6658530
chrX 6881898
chrY 477477
GL000009.2 1631
GL000194.1 9341
GL000195.1 11264
GL000205.2 17552
GL000213.1 24
GL000218.1 2653
GL000219.1 10395
KI270711.1 250
KI270713.1 9622
KI270721.1 311
KI270726.1 334
KI270727.1 677
KI270728.1 3645
KI270731.1 135
KI270734.1 1079

Fragment lengths

fragments min max mean median
fragments 321634189 1 5038 174.67 158
global fragment-length histogram

Files

Filename Size md5
63a8f06d5fb7ddfdbd3541dd984c53fb208f902a.gz 2.98 GB 4fce3a6fecb6a7b4be70ddb4d7ee1289
63a8f06d5fb7ddfdbd3541dd984c53fb208f902a.gz.tbi 1.32 MB ea59112b7f0aad663ea3ed49fb60f9d1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 0e09f802b3c754aaed4bd318ab24703a
statistics/