Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/65dd629a0037be17954a4fe363a62a5de2075478content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 65dd629a0037be17954a4fe363a62a5de2075478
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 65dd629a0037be17954a4fe363a62a5de2075478
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2289_D04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TAACAAGCAATCGCAC-2289_D04, GAGGAGGCAGTTAGCC-2289_D04, TCAAGGAAGTTCCCGT-2289_D04, ATTACTGAGCACTTGG-2289_D04, AGACCCGGTTACTTCA-2289_D04 (top 5 of 4415 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
210,260,441
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 210260441
chr1 18671863
chr2 16672448
chr3 13728306
chr4 10857397
chr5 11782403
chr6 11673750
chr7 11298351
chr8 9480132
chr9 8723111
chr10 9845458
chr11 11189204
chr12 10253805
chr13 5627555
chr14 7008127
chr15 6506108
chr16 7641786
chr17 8983903
chr18 4896280
chr19 7690144
chr20 5485897
chr21 2400287
chr22 4248923
chrX 5537650
chrY 9395
GL000009.2 376
GL000194.1 4393
GL000195.1 4702
GL000205.2 11419
GL000213.1 59
GL000218.1 2977
GL000219.1 17248
KI270711.1 492
KI270713.1 1892
KI270721.1 94
KI270726.1 6
KI270727.1 360
KI270728.1 3720
KI270731.1 100
KI270734.1 320

Fragment lengths

fragments min max mean median
fragments 210260441 1 5038 184.86 163
global fragment-length histogram

Files

Filename Size md5
65dd629a0037be17954a4fe363a62a5de2075478.gz 2.01 GB a3418b8c2cc339467e7659fda9f0e56c
65dd629a0037be17954a4fe363a62a5de2075478.gz.tbi 1.05 MB 6c649ca22985b33382f9777f58d11446
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b54226d4d921b4cfae9b1717af1d1c5f
statistics/