Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/6765d31b99973b55c17fea0e500e8f5302f8b588content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 6765d31b99973b55c17fea0e500e8f5302f8b588
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 6765d31b99973b55c17fea0e500e8f5302f8b588
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1482_A03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GCTATAGGTTGAAGCC-1482_A03, CACGCTAAGCGAGGTG-1482_A03, ATTTAGCCAAGCCAGA-1482_A03, CATTGTGCATTGCAGC-1482_A03, ATCGGCCAGGGTCTAT-1482_A03 (top 5 of 3643 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
107,905,890
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 107905890
chr1 10091375
chr2 8250001
chr3 6804281
chr4 5021316
chr5 5728967
chr6 5730661
chr7 5558802
chr8 4780696
chr9 4842700
chr10 5177190
chr11 5945627
chr12 5128663
chr13 2725643
chr14 3588999
chr15 3397484
chr16 4033724
chr17 5202888
chr18 2364878
chr19 4538707
chr20 3003015
chr21 1243541
chr22 2441877
chrX 2153053
chrY 128432
GL000009.2 284
GL000194.1 2513
GL000195.1 3001
GL000205.2 4055
GL000213.1 55
GL000218.1 862
GL000219.1 7702
KI270711.1 360
KI270713.1 2202
KI270721.1 44
KI270726.1 130
KI270727.1 291
KI270728.1 1492
KI270731.1 137
KI270734.1 242

Fragment lengths

fragments min max mean median
fragments 107905890 1 5041 194.37 169
global fragment-length histogram

Files

Filename Size md5
6765d31b99973b55c17fea0e500e8f5302f8b588.gz 1.03 GB 1222810b9c37a974cd147e64d4a2f124
6765d31b99973b55c17fea0e500e8f5302f8b588.gz.tbi 783.59 KB 25d581e5634016208d54a560a80aa1e6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 7976174eb69e6ef3f6a6ba8e3597c661
statistics/