Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/693e02ac3156180a23875b14278b0f334fc9917dcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 693e02ac3156180a23875b14278b0f334fc9917d
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 693e02ac3156180a23875b14278b0f334fc9917d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2271_B08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACCAAACTCCGTAAAC-2271_B08, ATTACCCGTGAGCACT-2271_B08, AATCTCAAGCTTGCTC-2271_B08, GATGAGGGTGTGAGAG-2271_B08, AGCTTTAAGCTTTGGG-2271_B08 (top 5 of 3712 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
214,861,170
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 214861170
chr1 19001381
chr2 16587399
chr3 13820524
chr4 10965548
chr5 11671532
chr6 11795505
chr7 11358522
chr8 9713080
chr9 8981692
chr10 9967733
chr11 11407660
chr12 10471985
chr13 5782354
chr14 7155276
chr15 6679892
chr16 8043817
chr17 9492555
chr18 4919723
chr19 8394238
chr20 5795246
chr21 2557915
chr22 4593064
chrX 5639374
chrY 16073
GL000009.2 1124
GL000194.1 8215
GL000195.1 7335
GL000205.2 12696
GL000213.1 145
GL000218.1 2011
GL000219.1 10113
KI270711.1 409
KI270713.1 3066
KI270721.1 228
KI270726.1 15
KI270727.1 546
KI270728.1 2412
KI270731.1 350
KI270734.1 417

Fragment lengths

fragments min max mean median
fragments 214861170 1 5030 171.82 152
global fragment-length histogram

Files

Filename Size md5
693e02ac3156180a23875b14278b0f334fc9917d.gz 2.02 GB 98bb1bb68530707daf21d08cd8f304a3
693e02ac3156180a23875b14278b0f334fc9917d.gz.tbi 1.06 MB 40fac97d8f3164253d789845a01c96d6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a9a7fff85b4b64185cf98187f7ed88b6
statistics/