Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/6da44dec4b26584c81cdbf29799d97d85a339167content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 6da44dec4b26584c81cdbf29799d97d85a339167
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 6da44dec4b26584c81cdbf29799d97d85a339167
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2253_C01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTTAAGCCACCACAAC-2253_C01, GCCTTAACACAAAGGT-2253_C01, CATGCGGGTGCGCGTA-2253_C01, GATTGGTTCGTTCACC-2253_C01, TTGTTGCGTAAGGTCC-2253_C01 (top 5 of 4536 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
305,666,599
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 305666599
chr1 27179975
chr2 24008221
chr3 20085220
chr4 15818653
chr5 17016577
chr6 17071070
chr7 16158705
chr8 13972760
chr9 12623187
chr10 14360077
chr11 16149196
chr12 14858000
chr13 8412764
chr14 10191546
chr15 9459556
chr16 10956060
chr17 13146694
chr18 7057418
chr19 11206848
chr20 8094094
chr21 3549557
chr22 6138670
chrX 8075100
chrY 17065
GL000009.2 1254
GL000194.1 9374
GL000195.1 9356
GL000205.2 15040
GL000213.1 164
GL000218.1 2157
GL000219.1 13132
KI270711.1 464
KI270713.1 4124
KI270721.1 280
KI270726.1 22
KI270727.1 677
KI270728.1 2568
KI270731.1 357
KI270734.1 617

Fragment lengths

fragments min max mean median
fragments 305666599 1 5040 202.67 168
global fragment-length histogram

Files

Filename Size md5
6da44dec4b26584c81cdbf29799d97d85a339167.gz 2.84 GB 0c88d09bfbf13973ffdfdc8580c801c5
6da44dec4b26584c81cdbf29799d97d85a339167.gz.tbi 1.28 MB 8d98567abb053f85c5b4090eb5710f6d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 602e9b748ae731cf03eef15b5d332f8a
statistics/