Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/6ecd93aef1dfb54ed23aac8e8323e292f384c288content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 6ecd93aef1dfb54ed23aac8e8323e292f384c288
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 6ecd93aef1dfb54ed23aac8e8323e292f384c288
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2346_B06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GAACCAGCATAGGCGA-2346_B06, GTGTGCGGTTGCGCGA-2346_B06, CTTAAGGGTGGTTCTT-2346_B06, GATTGCGTCGCAACAT-2346_B06, AGCCAGTGTCCTAATC-2346_B06 (top 5 of 4856 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
166,775,208
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 166775208
chr1 14941580
chr2 12909349
chr3 10735751
chr4 8556390
chr5 9134920
chr6 9258420
chr7 8892912
chr8 7548927
chr9 7020831
chr10 7723709
chr11 8784266
chr12 8197204
chr13 4532704
chr14 5536964
chr15 5091381
chr16 6200743
chr17 7367206
chr18 3799635
chr19 6922253
chr20 4374772
chr21 2007488
chr22 3398123
chrX 3560902
chrY 243380
GL000009.2 674
GL000194.1 3565
GL000195.1 5764
GL000205.2 10684
GL000213.1 61
GL000218.1 1539
GL000219.1 7413
KI270711.1 447
KI270713.1 3889
KI270721.1 169
KI270726.1 24
KI270727.1 137
KI270728.1 547
KI270731.1 139
KI270734.1 346

Fragment lengths

fragments min max mean median
fragments 166775208 1 5039 168.11 150
global fragment-length histogram

Files

Filename Size md5
6ecd93aef1dfb54ed23aac8e8323e292f384c288.gz 1.56 GB 03ed0f576a70a3b99a41ad68e4fc1ba1
6ecd93aef1dfb54ed23aac8e8323e292f384c288.gz.tbi 955.79 KB 44abee26392e2cd1be707823b0d67421
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB fe75425e416c783bfac1329d33c101d6
statistics/