Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/6fc1e3314264c5e533c729a09c4166f1218cee99content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 6fc1e3314264c5e533c729a09c4166f1218cee99
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 6fc1e3314264c5e533c729a09c4166f1218cee99
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2330_A09
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGGCAATAGTTGGCCA-2330_A09, CACATACAGGCCTGGT-2330_A09, CGAAGAATCTTTGAGA-2330_A09, CAGGTTTAGCGATAGA-2330_A09, AACCCGCAGCGATAAG-2330_A09 (top 5 of 3557 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
185,599,122
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 185599122
chr1 16013575
chr2 14576434
chr3 12376342
chr4 10445189
chr5 10731878
chr6 10500693
chr7 9905611
chr8 8669585
chr9 7598347
chr10 8496784
chr11 9699457
chr12 9035821
chr13 5278560
chr14 6123778
chr15 5400685
chr16 6393400
chr17 7384445
chr18 4503756
chr19 6378665
chr20 4616968
chr21 2178867
chr22 3454207
chrX 5762415
chrY 21035
GL000009.2 818
GL000194.1 4570
GL000195.1 4662
GL000205.2 13220
GL000213.1 65
GL000218.1 3590
GL000219.1 17006
KI270711.1 385
KI270713.1 1529
KI270721.1 56
KI270726.1 13
KI270727.1 280
KI270728.1 5954
KI270731.1 147
KI270734.1 330

Fragment lengths

fragments min max mean median
fragments 185599122 1 5031 183.06 160
global fragment-length histogram

Files

Filename Size md5
6fc1e3314264c5e533c729a09c4166f1218cee99.gz 1.74 GB aa1a046f28ac6c9db3b87875f65361c4
6fc1e3314264c5e533c729a09c4166f1218cee99.gz.tbi 1020.0 KB 1c0093db287990c2db600cbb8e2a7396
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 0c07fd43b6e4dc70ee111c7b0b6d79c0
statistics/