Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/71bb56f1ddc254728b61ba05c0749ecc582f889bcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 71bb56f1ddc254728b61ba05c0749ecc582f889b
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 71bb56f1ddc254728b61ba05c0749ecc582f889b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2306_C02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AAGCTTGGTGCTGGTG-2306_C02, GTGAGGAGTTCGCTTG-2306_C02, ACCAGGCTCCTTAAGA-2306_C02, TGTGCGGGTTCCTGTG-2306_C02, TGAGCCGGTCCTAAGA-2306_C02 (top 5 of 3637 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
183,405,307
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 183405307
chr1 16468816
chr2 14402343
chr3 11913365
chr4 9377694
chr5 10113873
chr6 10196287
chr7 9682294
chr8 8225341
chr9 7826081
chr10 8672892
chr11 9758457
chr12 8904591
chr13 4936919
chr14 6116482
chr15 5627618
chr16 6594907
chr17 7962827
chr18 4234713
chr19 6851511
chr20 4816794
chr21 2099404
chr22 3682389
chrX 4886615
chrY 10181
GL000009.2 462
GL000194.1 3528
GL000195.1 4477
GL000205.2 9788
GL000213.1 42
GL000218.1 2600
GL000219.1 15020
KI270711.1 466
KI270713.1 1860
KI270721.1 63
KI270726.1 9
KI270727.1 373
KI270728.1 3795
KI270731.1 100
KI270734.1 330

Fragment lengths

fragments min max mean median
fragments 183405307 1 5035 188.85 165
global fragment-length histogram

Files

Filename Size md5
71bb56f1ddc254728b61ba05c0749ecc582f889b.gz 1.73 GB 8fdc3e778a7d538bf2a7025b6565d437
71bb56f1ddc254728b61ba05c0749ecc582f889b.gz.tbi 999.0 KB bec00c0d5c3bb1e8d7412f86bb875aae
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 718727d67675723b4d74969063aebc1d
statistics/