Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/730701191cdf5defff05b5ca98941d244a8fda91content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 730701191cdf5defff05b5ca98941d244a8fda91
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 730701191cdf5defff05b5ca98941d244a8fda91
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2440_1_D02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TATCACAAGGCTACAT-2440_1_D02, CTTTAGGCAAACTAAG-2440_1_D02, GTGATCAGTTACAAAC-2440_1_D02, ACGAACAAGGTCCGTA-2440_1_D02, CACTTTGTCCTGAATA-2440_1_D02 (top 5 of 2135 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
74,968,617
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 74968617
chr1 6654476
chr2 5807222
chr3 4820687
chr4 3863864
chr5 4168772
chr6 4104476
chr7 3913003
chr8 3439654
chr9 3241200
chr10 3526445
chr11 4029239
chr12 3546834
chr13 2042077
chr14 2479481
chr15 2220025
chr16 2611023
chr17 3258865
chr18 1770738
chr19 2820339
chr20 1928350
chr21 903116
chr22 1503672
chrX 2283890
chrY 9621
GL000009.2 374
GL000194.1 1975
GL000195.1 1889
GL000205.2 4923
GL000213.1 24
GL000218.1 1404
GL000219.1 6035
KI270711.1 288
KI270713.1 877
KI270721.1 50
KI270726.1 2
KI270727.1 179
KI270728.1 3347
KI270731.1 39
KI270734.1 142

Fragment lengths

fragments min max mean median
fragments 74968617 1 5040 160.7 136
global fragment-length histogram

Files

Filename Size md5
730701191cdf5defff05b5ca98941d244a8fda91.gz 724.15 MB 2bf0f69965aa333d83c3fff300204da4
730701191cdf5defff05b5ca98941d244a8fda91.gz.tbi 697.46 KB 71579588f187e14d46b65913e0e8fde8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 19101a15fe8e6d72325c84a549045e96
statistics/