Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/750e66e4ed5a4c993cf784c580fcc4dd10ee2d39content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 750e66e4ed5a4c993cf784c580fcc4dd10ee2d39
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 750e66e4ed5a4c993cf784c580fcc4dd10ee2d39
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2012_B05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACACTTAAGTCCTGAG-2012_B05, TCAGTAGGTTTATGGG-2012_B05, ATCAGGTTCCGCCAAA-2012_B05, AGCTTAATCATAACCA-2012_B05, TGCCATTGTTCCTGTG-2012_B05 (top 5 of 5333 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
147,505,023
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 147505023
chr1 13557893
chr2 11340337
chr3 9204277
chr4 7088098
chr5 7787533
chr6 7964312
chr7 7527569
chr8 6412393
chr9 6511530
chr10 7058693
chr11 8011500
chr12 7056932
chr13 3841519
chr14 4931087
chr15 4616307
chr16 5582527
chr17 7027436
chr18 3284973
chr19 6360773
chr20 4047151
chr21 1780342
chr22 3181745
chrX 3083267
chrY 212080
GL000009.2 970
GL000194.1 3785
GL000195.1 5968
GL000205.2 8468
GL000213.1 17
GL000218.1 1159
GL000219.1 5307
KI270711.1 273
KI270713.1 4808
KI270721.1 192
KI270726.1 150
KI270727.1 497
KI270728.1 2714
KI270731.1 63
KI270734.1 378

Fragment lengths

fragments min max mean median
fragments 147505023 1 5036 152.99 132
global fragment-length histogram

Files

Filename Size md5
750e66e4ed5a4c993cf784c580fcc4dd10ee2d39.gz 1.4 GB ab6b350cc5edb361abc76548c2ece8a7
750e66e4ed5a4c993cf784c580fcc4dd10ee2d39.gz.tbi 902.14 KB e0c9808420eab0485a22af51ba50bd47
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a95d2e212f54f9f5e9959936abf955d7
statistics/