Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/756c69e73f483cf54d2643674861c1a747512adbcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 756c69e73f483cf54d2643674861c1a747512adb
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 756c69e73f483cf54d2643674861c1a747512adb
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1042_C06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTTAGGCGTCCTAATC-1042_C06, TGCATCCTCGATTTAG-1042_C06, CCTCCTGAGGTCCACA-1042_C06, CTTAGTTTCCATAATG-1042_C06, TGGACGGAGTAACGAG-1042_C06 (top 5 of 5116 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
297,044,555
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 297044555
chr1 26215087
chr2 23844833
chr3 19701842
chr4 15796481
chr5 16833903
chr6 16759583
chr7 16094504
chr8 13927401
chr9 12237521
chr10 13965492
chr11 15634624
chr12 14580194
chr13 8361044
chr14 9874000
chr15 9190425
chr16 10368527
chr17 12282707
chr18 6895668
chr19 10492180
chr20 7801963
chr21 3470811
chr22 5825618
chrX 6452325
chrY 375996
GL000009.2 630
GL000194.1 7644
GL000195.1 7198
GL000205.2 11213
GL000213.1 147
GL000218.1 2599
GL000219.1 21391
KI270711.1 656
KI270713.1 4183
KI270721.1 98
KI270726.1 371
KI270727.1 489
KI270728.1 3863
KI270731.1 366
KI270734.1 978

Fragment lengths

fragments min max mean median
fragments 297044555 1 5042 183.77 166
global fragment-length histogram

Files

Filename Size md5
756c69e73f483cf54d2643674861c1a747512adb.gz 2.81 GB c5d6eddcea418e9e882001bd5ea912a7
756c69e73f483cf54d2643674861c1a747512adb.gz.tbi 1.26 MB dfed04e0ca052b93120d5c49fc9b2b4f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 19d74ed8a68fac2f8b819e24b5fd0ca0
statistics/