Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/75c184e7dae7ea6680f6679d690936f148d371f7content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 75c184e7dae7ea6680f6679d690936f148d371f7
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 75c184e7dae7ea6680f6679d690936f148d371f7
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2229_C06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TATCGAGGTGTTTCAC-2229_C06, TATAACCCATGCTATG-2229_C06, CAATGCCCACCTGTAA-2229_C06, CACCGGTAGCTGTACG-2229_C06, GTTTACCGTACCGAAC-2229_C06 (top 5 of 6209 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
382,185,873
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 382185873
chr1 33533434
chr2 29643282
chr3 24739775
chr4 19847111
chr5 20943354
chr6 21205702
chr7 20363696
chr8 17335714
chr9 15759056
chr10 17681373
chr11 20348777
chr12 18729442
chr13 10361960
chr14 12845153
chr15 11702703
chr16 14124702
chr17 16610935
chr18 8775180
chr19 14922835
chr20 10058585
chr21 4552274
chr22 7985818
chrX 10008016
chrY 23524
GL000009.2 1682
GL000194.1 14718
GL000195.1 12391
GL000205.2 20191
GL000213.1 237
GL000218.1 3511
GL000219.1 18392
KI270711.1 528
KI270713.1 5435
KI270721.1 437
KI270726.1 35
KI270727.1 913
KI270728.1 3664
KI270731.1 559
KI270734.1 779

Fragment lengths

fragments min max mean median
fragments 382185873 1 5038 161.62 148
global fragment-length histogram

Files

Filename Size md5
75c184e7dae7ea6680f6679d690936f148d371f7.gz 3.52 GB b7862f4e1b8c8be7d343a470fe7f8e86
75c184e7dae7ea6680f6679d690936f148d371f7.gz.tbi 1.45 MB 49b19ae3de7ebcb1b1bd907d214ae86a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 897722a4097d5ab07fd1943c8adb05ae
statistics/