Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/77242589878160aaa41005b930498b92f057eddfcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 77242589878160aaa41005b930498b92f057eddf
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 77242589878160aaa41005b930498b92f057eddf
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2474_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTTGACCGTTCGCTTG-2474_A05, ACGTTACAGACAGGCG-2474_A05, TGTGCGCAGTAACGAG-2474_A05, CATCCTCAGGCATGAA-2474_A05, CAAACCGTCAATGACC-2474_A05 (top 5 of 4020 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
245,118,702
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 245118702
chr1 21773693
chr2 19300899
chr3 16121598
chr4 12755167
chr5 13444208
chr6 13776214
chr7 13292383
chr8 11075020
chr9 10202377
chr10 11473489
chr11 13008282
chr12 12114030
chr13 6712621
chr14 8310862
chr15 7579256
chr16 9001886
chr17 10562453
chr18 5648117
chr19 9144707
chr20 6400761
chr21 2880677
chr22 5004471
chrX 5115214
chrY 370396
GL000009.2 1564
GL000194.1 4150
GL000195.1 4577
GL000205.2 12576
GL000213.1 2
GL000218.1 4930
GL000219.1 15335
KI270711.1 655
KI270713.1 4196
KI270721.1 166
KI270726.1 25
KI270727.1 234
KI270728.1 567
KI270731.1 98
KI270734.1 846

Fragment lengths

fragments min max mean median
fragments 245118702 1 5036 196.71 166
global fragment-length histogram

Files

Filename Size md5
77242589878160aaa41005b930498b92f057eddf.gz 2.27 GB 56eba872a97a78629a5334e1e9b5cd4d
77242589878160aaa41005b930498b92f057eddf.gz.tbi 1.11 MB 7ba867ab1d80e5016a8dc9499535e0d2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 5655743cc804aa867a47be65b5130429
statistics/