Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/776e9fc7bbd0612f07f803a4998445036c4f2425content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 776e9fc7bbd0612f07f803a4998445036c4f2425
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 776e9fc7bbd0612f07f803a4998445036c4f2425
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2283_A08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGCTATTAGCACGATT-2283_A08, ACGAATCTCCTAAATG-2283_A08, AGGATTGAGCGCCTTT-2283_A08, ACAGGTAAGGCTACAT-2283_A08, TGTTACTTCTCACTAT-2283_A08 (top 5 of 4739 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
263,975,506
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 263975506
chr1 23588713
chr2 20513367
chr3 17096812
chr4 13522826
chr5 14502464
chr6 14600113
chr7 13851457
chr8 11986460
chr9 11049511
chr10 12290794
chr11 14063546
chr12 12782889
chr13 7215535
chr14 8737808
chr15 8147777
chr16 9676292
chr17 11580453
chr18 6015825
chr19 10109742
chr20 7037720
chr21 3112655
chr22 5456546
chrX 6965347
chrY 16802
GL000009.2 1183
GL000194.1 8728
GL000195.1 8824
GL000205.2 13500
GL000213.1 183
GL000218.1 2104
GL000219.1 11077
KI270711.1 460
KI270713.1 3736
KI270721.1 274
KI270726.1 17
KI270727.1 695
KI270728.1 2391
KI270731.1 336
KI270734.1 544

Fragment lengths

fragments min max mean median
fragments 263975506 1 5057 180.32 158
global fragment-length histogram

Files

Filename Size md5
776e9fc7bbd0612f07f803a4998445036c4f2425.gz 2.46 GB d841db42cbaaab629bb2c0a684159c37
776e9fc7bbd0612f07f803a4998445036c4f2425.gz.tbi 1.19 MB a98e34e60f9c61e20b71c314afd0bd81
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 16ed6fb187ec7d8342ede4cd04a13d73
statistics/