Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/7880de83fcc27ca64b60593dc9f6079a498a20e6content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 7880de83fcc27ca64b60593dc9f6079a498a20e6
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 7880de83fcc27ca64b60593dc9f6079a498a20e6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1955_B06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CTTCTAAGTTTACGTC-1955_B06, GTGAGCGAGTCAATCA-1955_B06, GTGCGGTTCGTAATCA-1955_B06, ATCACCCTCTCCATGC-1955_B06, CTGAAACTCATGGTTA-1955_B06 (top 5 of 9264 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
316,192,806
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 316192806
chr1 28499964
chr2 24248437
chr3 20082014
chr4 15681795
chr5 17076825
chr6 17291051
chr7 16801897
chr8 14144018
chr9 13171602
chr10 14541874
chr11 16945176
chr12 15551368
chr13 8310480
chr14 10689481
chr15 9785296
chr16 12097271
chr17 14438646
chr18 6913972
chr19 13804871
chr20 8474777
chr21 3731957
chr22 6790022
chrX 6611244
chrY 439628
GL000009.2 1291
GL000194.1 8285
GL000195.1 13793
GL000205.2 15871
GL000213.1 26
GL000218.1 2202
GL000219.1 10330
KI270711.1 331
KI270713.1 10956
KI270721.1 453
KI270726.1 308
KI270727.1 883
KI270728.1 3034
KI270731.1 170
KI270734.1 1207

Fragment lengths

fragments min max mean median
fragments 316192806 1 5030 142.34 124
global fragment-length histogram

Files

Filename Size md5
7880de83fcc27ca64b60593dc9f6079a498a20e6.gz 2.93 GB f3d72859db2306e90c2f58699395e496
7880de83fcc27ca64b60593dc9f6079a498a20e6.gz.tbi 1.29 MB 82824c00d418bf811064703d556ca129
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 718b9b4f95c63b5f372784c3781ed0d1
statistics/