Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/791b5cfd80ebeb6dc07076b61147b1671bc34e78content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 791b5cfd80ebeb6dc07076b61147b1671bc34e78
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 791b5cfd80ebeb6dc07076b61147b1671bc34e78
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2326_E01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TACGGTTAGTTGTCAA-2326_E01, TATCACGCATCGCTTT-2326_E01, GGGATTAAGCACGTTG-2326_E01, ATGTCATCAAACATAG-2326_E01, ATGAAGTAGTCAGTAC-2326_E01 (top 5 of 5614 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
256,243,929
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 256243929
chr1 22664701
chr2 20056942
chr3 16674676
chr4 13408812
chr5 14369708
chr6 14220331
chr7 13536864
chr8 11765449
chr9 10753050
chr10 11986106
chr11 13545893
chr12 12445564
chr13 7080054
chr14 8510875
chr15 7617757
chr16 9022839
chr17 10826772
chr18 6022036
chr19 9505732
chr20 6650123
chr21 3026004
chr22 4982407
chrX 7484413
chrY 21504
GL000009.2 847
GL000194.1 5875
GL000195.1 6340
GL000205.2 14117
GL000213.1 87
GL000218.1 4081
GL000219.1 23058
KI270711.1 577
KI270713.1 2624
KI270721.1 136
KI270726.1 9
KI270727.1 447
KI270728.1 6530
KI270731.1 158
KI270734.1 431

Fragment lengths

fragments min max mean median
fragments 256243929 1 5041 169.55 156
global fragment-length histogram

Files

Filename Size md5
791b5cfd80ebeb6dc07076b61147b1671bc34e78.gz 2.41 GB b5f9e8c770287e7cf276ec7408182c94
791b5cfd80ebeb6dc07076b61147b1671bc34e78.gz.tbi 1.2 MB 3594cc0a56e8f3c70c420798e0aff9e7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 2a5a164baab400c0a733d6390376c84e
statistics/