Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/79329691ec96e140d840a999e3f35f883ca639ebcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 79329691ec96e140d840a999e3f35f883ca639eb
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 79329691ec96e140d840a999e3f35f883ca639eb
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2295_E02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CATCGCTTCTGTTCAT-2295_E02, GGGTCACTCCTCGATC-2295_E02, GGTCAGGAGGAGTCTT-2295_E02, TGAGTGAAGAACCTAC-2295_E02, TGCTCTCAGAGGAAGG-2295_E02 (top 5 of 2774 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
156,250,610
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 156250610
chr1 13761201
chr2 12338219
chr3 10290944
chr4 8289416
chr5 8824942
chr6 8767262
chr7 8355788
chr8 7157947
chr9 6477353
chr10 7222514
chr11 8273951
chr12 7682096
chr13 4284797
chr14 5220523
chr15 4785888
chr16 5573078
chr17 6471793
chr18 3697777
chr19 5534138
chr20 4042744
chr21 1785164
chr22 3101148
chrX 4261010
chrY 10446
GL000009.2 455
GL000194.1 3427
GL000195.1 3982
GL000205.2 10354
GL000213.1 45
GL000218.1 2593
GL000219.1 13509
KI270711.1 327
KI270713.1 1397
KI270721.1 61
KI270726.1 5
KI270727.1 279
KI270728.1 3625
KI270731.1 126
KI270734.1 286

Fragment lengths

fragments min max mean median
fragments 156250610 1 5025 175.36 158
global fragment-length histogram

Files

Filename Size md5
79329691ec96e140d840a999e3f35f883ca639eb.gz 1.46 GB 628ab2572b85c3f125405ffcb8b031ad
79329691ec96e140d840a999e3f35f883ca639eb.gz.tbi 925.11 KB cc066c0bffe92f255e019bc1b1d44513
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 60524fcf6d22d2aa83637c6ae7e6d631
statistics/