Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1036_A03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGCATTTGTTTCAGGA-1036_A03, GTGAACAAGGAGCACG-1036_A03, AGAAGGTGTCCCGGAA-1036_A03, GAGGTAGGTAATAGCT-1036_A03, AAGCGTTTCTTGGACG-1036_A03 (top 5 of 6749 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
241,100,375
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 241100375
chr1 21190066
chr2 19382809
chr3 16107217
chr4 12817270
chr5 13670653
chr6 13470596
chr7 13062106
chr8 11367115
chr9 9899127
chr10 11313556
chr11 12699562
chr12 11785088
chr13 6688472
chr14 7961290
chr15 7421772
chr16 8612408
chr17 9963130
chr18 5660396
chr19 8299197
chr20 6404083
chr21 2820297
chr22 4833536
chrX 5260179
chrY 368340
GL000009.2 834
GL000194.1 5092
GL000195.1 4352
GL000205.2 12572
GL000213.1 73
GL000218.1 3192
GL000219.1 9958
KI270711.1 468
KI270713.1 1650
KI270721.1 120
KI270726.1 12
KI270727.1 217
KI270728.1 2461
KI270731.1 286
KI270734.1 823

Fragment lengths

fragments min max mean median
fragments 241100375 1 5042 204.71 170
global fragment-length histogram

Files

Filename Size md5
7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4.gz 2.36 GB ae9064e877b783e707dde82b5b25ff2b
7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4.gz.tbi 1.15 MB ae6269fbedc8a5844b11f7cf120d33a6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB cfd65090609c0ed525d00ba66cc31adb
statistics/