Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/7b12ba398484e050a1c0b6d40b3c86655eb5bd09content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 7b12ba398484e050a1c0b6d40b3c86655eb5bd09
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 7b12ba398484e050a1c0b6d40b3c86655eb5bd09
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 960_B03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACCAAGCGTCACCTAT-960_B03, CCTTGTTCACCTGCTC-960_B03, CTGTATTTCAACAAGG-960_B03, TTGAGCTAGTAAGAAC-960_B03, TGTGCGGGTAAACAAG-960_B03 (top 5 of 3038 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
92,440,740
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 92440740
chr1 8679019
chr2 7004590
chr3 5878038
chr4 4326634
chr5 4945666
chr6 5073554
chr7 4662582
chr8 4124754
chr9 4090412
chr10 4505527
chr11 5051978
chr12 4437216
chr13 2361217
chr14 3109303
chr15 2975048
chr16 3380977
chr17 4453670
chr18 2046569
chr19 3793551
chr20 2484635
chr21 1042742
chr22 2043654
chrX 1843894
chrY 102420
GL000009.2 252
GL000194.1 2084
GL000195.1 3139
GL000205.2 4728
GL000213.1 46
GL000218.1 892
GL000219.1 7550
KI270711.1 213
KI270713.1 1841
KI270721.1 40
KI270726.1 216
KI270727.1 253
KI270728.1 1510
KI270731.1 110
KI270734.1 216

Fragment lengths

fragments min max mean median
fragments 92440740 1 5041 203.37 173
global fragment-length histogram

Files

Filename Size md5
7b12ba398484e050a1c0b6d40b3c86655eb5bd09.gz 892.15 MB 8936cf5cb751187bcc143e237ad30e62
7b12ba398484e050a1c0b6d40b3c86655eb5bd09.gz.tbi 739.62 KB 0c34efe64d56a08225356c11cb1a73e7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f27122752b431b6e2292e383d1cd7a67
statistics/