Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/7ebfffcb0886bc89d325810aeaab4f40231f4301content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 7ebfffcb0886bc89d325810aeaab4f40231f4301
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 7ebfffcb0886bc89d325810aeaab4f40231f4301
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2453_F02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TGTTACTTCGATATTG-2453_F02, CGTGTGTCACGTTACA-2453_F02, CGATTATCAATCATGT-2453_F02, ATGGCTAGTCACAGCG-2453_F02, AGTTTGATCGTTTCGC-2453_F02 (top 5 of 4954 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
210,541,205
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 210541205
chr1 18773430
chr2 16517036
chr3 13731148
chr4 10930190
chr5 11517037
chr6 11662556
chr7 11301691
chr8 9593531
chr9 8841691
chr10 9853901
chr11 11118271
chr12 10246444
chr13 5844929
chr14 7109656
chr15 6541259
chr16 7706098
chr17 9127256
chr18 4868545
chr19 7850648
chr20 5600441
chr21 2564975
chr22 4409201
chrX 4435591
chrY 348215
GL000009.2 1770
GL000194.1 4045
GL000195.1 4550
GL000205.2 12091
GL000213.1 6
GL000218.1 4812
GL000219.1 13891
KI270711.1 698
KI270713.1 3473
KI270721.1 169
KI270726.1 27
KI270727.1 282
KI270728.1 673
KI270731.1 136
KI270734.1 842

Fragment lengths

fragments min max mean median
fragments 210541205 1 5023 185 159
global fragment-length histogram

Files

Filename Size md5
7ebfffcb0886bc89d325810aeaab4f40231f4301.gz 2.0 GB e6a2384cbe77b93830afc9eda589f99d
7ebfffcb0886bc89d325810aeaab4f40231f4301.gz.tbi 1.05 MB ddae8c77c41e103d2f11522a96cfb21d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB c006dc3225bbd50f0882b05921678d28
statistics/