Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/84184d0cd1564b0301b4cbaeba3a294ca47316f4content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 84184d0cd1564b0301b4cbaeba3a294ca47316f4
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 84184d0cd1564b0301b4cbaeba3a294ca47316f4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2531_1_D03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTTCCTGAGGGACTAA-2531_1_D03, GCAATGAAGCTCCCTG-2531_1_D03, AATACCGGTGAGCAAG-2531_1_D03, ATCCATAAGCCTCTGT-2531_1_D03, TCGATTAAGGGCTTTG-2531_1_D03 (top 5 of 1923 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
120,903,583
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 120903583
chr1 10590575
chr2 9557404
chr3 7995254
chr4 6478570
chr5 6779452
chr6 6774065
chr7 6515542
chr8 5552197
chr9 4990158
chr10 5621971
chr11 6343872
chr12 5941092
chr13 3383797
chr14 4036668
chr15 3713884
chr16 4289392
chr17 4990595
chr18 2847562
chr19 4213412
chr20 3094603
chr21 1442887
chr22 2402176
chrX 3312876
chrY 9475
GL000009.2 873
GL000194.1 2260
GL000195.1 2566
GL000205.2 7240
GL000213.1 99
GL000218.1 1729
GL000219.1 6828
KI270711.1 298
KI270713.1 1774
KI270721.1 107
KI270726.1 11
KI270727.1 474
KI270728.1 1398
KI270731.1 119
KI270734.1 328

Fragment lengths

fragments min max mean median
fragments 120903583 1 5039 174.16 158
global fragment-length histogram

Files

Filename Size md5
84184d0cd1564b0301b4cbaeba3a294ca47316f4.gz 1.14 GB 6e69c1b8bf55f4dcfc54aedda6d3b018
84184d0cd1564b0301b4cbaeba3a294ca47316f4.gz.tbi 839.89 KB 312a5a8dd921177350bb275b96851539
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB dbb7f2372a3df8f0ad9d0238dd1fd950
statistics/