Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/84f34d886129cd140cbe2f8676c0af44850a4712content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 84f34d886129cd140cbe2f8676c0af44850a4712
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 84f34d886129cd140cbe2f8676c0af44850a4712
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2278_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGAACAAAGTAACGGA-2278_A05, AGTGTTTCAGCTAATT-2278_A05, GTGTTACAGCACTAGT-2278_A05, CCTCAATGTGTCACGG-2278_A05, CTCCGGACATCGCTTT-2278_A05 (top 5 of 3370 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
255,196,533
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 255196533
chr1 22655081
chr2 19720434
chr3 16446150
chr4 13134492
chr5 13921358
chr6 14142648
chr7 13400986
chr8 11527701
chr9 10572023
chr10 11862451
chr11 13501137
chr12 12350239
chr13 6916659
chr14 8584816
chr15 7919854
chr16 9542999
chr17 11262216
chr18 5817013
chr19 10031722
chr20 6752988
chr21 3047422
chr22 5387620
chrX 6624272
chrY 16895
GL000009.2 1123
GL000194.1 9763
GL000195.1 8940
GL000205.2 14235
GL000213.1 132
GL000218.1 2259
GL000219.1 12398
KI270711.1 448
KI270713.1 3718
KI270721.1 271
KI270726.1 23
KI270727.1 570
KI270728.1 2595
KI270731.1 344
KI270734.1 538

Fragment lengths

fragments min max mean median
fragments 255196533 1 5041 184.49 158
global fragment-length histogram

Files

Filename Size md5
84f34d886129cd140cbe2f8676c0af44850a4712.gz 2.34 GB e60fec892503115a70707d8852fd4df5
84f34d886129cd140cbe2f8676c0af44850a4712.gz.tbi 1.15 MB 4901bfed62244fc311be17760a7c9db0
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 836bb3801f3c347f798958a1e34f9883
statistics/