Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/85d715868b7663a866d320b2e88f965d5c36b58acontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 85d715868b7663a866d320b2e88f965d5c36b58a
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 85d715868b7663a866d320b2e88f965d5c36b58a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1042_B06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TACTCAAAGTAGCGGG-1042_B06, TGTGGAGCAGCTCATA-1042_B06, GGCAGGATCATTCATC-1042_B06, GGAGGTTAGCGGATAA-1042_B06, CTCAATAAGTAACCCG-1042_B06 (top 5 of 4855 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
274,471,152
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 274471152
chr1 24328852
chr2 21996362
chr3 18079079
chr4 14531940
chr5 15550193
chr6 15392865
chr7 14879351
chr8 12889977
chr9 11223015
chr10 12939608
chr11 14381871
chr12 13388757
chr13 7786420
chr14 9114455
chr15 8582552
chr16 9648411
chr17 11334428
chr18 6381419
chr19 9705251
chr20 7289846
chr21 3212378
chr22 5398213
chrX 6011156
chrY 366626
GL000009.2 646
GL000194.1 6819
GL000195.1 6819
GL000205.2 11465
GL000213.1 151
GL000218.1 2262
GL000219.1 19674
KI270711.1 515
KI270713.1 3865
KI270721.1 84
KI270726.1 386
KI270727.1 506
KI270728.1 3609
KI270731.1 349
KI270734.1 977

Fragment lengths

fragments min max mean median
fragments 274471152 1 5042 181.96 165
global fragment-length histogram

Files

Filename Size md5
85d715868b7663a866d320b2e88f965d5c36b58a.gz 2.6 GB f2328d21ec4fa9a2ef751b7921b498b8
85d715868b7663a866d320b2e88f965d5c36b58a.gz.tbi 1.2 MB fc956e01faf0667aa4659db407bf2823
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 232a810adb5be34dd69da0055c08d583
statistics/