Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/8a28f4cbd0e8c6cc277e50c50b0996804c030824content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 8a28f4cbd0e8c6cc277e50c50b0996804c030824
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 8a28f4cbd0e8c6cc277e50c50b0996804c030824
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 994_C03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACAGGATCAGCACCAT-994_C03, ACGAGTAAGCCACAAT-994_C03, GCAGGATAGTTATTCC-994_C03, AACTGTTCAACTAGAA-994_C03, GTACACCCAGCAAGGC-994_C03 (top 5 of 3837 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
73,087,813
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 73087813
chr1 6891633
chr2 5472638
chr3 4547113
chr4 3326096
chr5 3801792
chr6 3987837
chr7 3664162
chr8 3133600
chr9 3303021
chr10 3534402
chr11 4002115
chr12 3475901
chr13 1822194
chr14 2442546
chr15 2320733
chr16 2740500
chr17 3680481
chr18 1572824
chr19 3335094
chr20 1984232
chr21 858829
chr22 1660219
chrX 1431409
chrY 79704
GL000009.2 188
GL000194.1 1825
GL000195.1 2290
GL000205.2 3756
GL000213.1 37
GL000218.1 700
GL000219.1 6415
KI270711.1 252
KI270713.1 1674
KI270721.1 56
KI270726.1 129
KI270727.1 168
KI270728.1 1026
KI270731.1 68
KI270734.1 154

Fragment lengths

fragments min max mean median
fragments 73087813 1 5041 201.72 166
global fragment-length histogram

Files

Filename Size md5
8a28f4cbd0e8c6cc277e50c50b0996804c030824.gz 724.51 MB f3d11b2521f1d81f9826c5edcc121c44
8a28f4cbd0e8c6cc277e50c50b0996804c030824.gz.tbi 692.22 KB 11840be0a3113e3b54eb88a451a1c235
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 94b6469ade2b0eb752d589f16a5ce13b
statistics/