Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/8a4bf81821a0f425be8ba9c15dfad6b509020312content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 8a4bf81821a0f425be8ba9c15dfad6b509020312
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 8a4bf81821a0f425be8ba9c15dfad6b509020312
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2362_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TACAGCTAGTGAGCAA-2362_A05, AAACCGGCACTCGCTC-2362_A05, CGTGTGTCATAGACTT-2362_A05, GACCTGCAGATTGAGG-2362_A05, GTAAGCAAGCTCGCTT-2362_A05 (top 5 of 4744 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
183,145,981
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 183145981
chr1 16600862
chr2 14193151
chr3 11823392
chr4 9130106
chr5 9963597
chr6 10162232
chr7 9706432
chr8 8113352
chr9 7661945
chr10 8542903
chr11 9773326
chr12 8986288
chr13 4883416
chr14 6188979
chr15 5713875
chr16 6798301
chr17 8302255
chr18 4069579
chr19 7622974
chr20 4868627
chr21 2145455
chr22 3781690
chrX 3856859
chrY 224035
GL000009.2 425
GL000194.1 3010
GL000195.1 5666
GL000205.2 8930
GL000213.1 26
GL000218.1 1077
GL000219.1 7103
KI270711.1 410
KI270713.1 4537
KI270721.1 141
KI270726.1 29
KI270727.1 101
KI270728.1 344
KI270731.1 146
KI270734.1 405

Fragment lengths

fragments min max mean median
fragments 183145981 1 5040 193.25 165
global fragment-length histogram

Files

Filename Size md5
8a4bf81821a0f425be8ba9c15dfad6b509020312.gz 1.71 GB 1fcaefabd0923efea22aa36789aae4b6
8a4bf81821a0f425be8ba9c15dfad6b509020312.gz.tbi 983.95 KB 796d34bcb8e6fa1874ea20e1633fd805
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a601f99bc35eb2d8ed4d7c96f578a001
statistics/