Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/8b4e238e60991e024a04d38292e487c475cb6cefcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 8b4e238e60991e024a04d38292e487c475cb6cef
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 8b4e238e60991e024a04d38292e487c475cb6cef
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2278_B05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTTGCGGAGTAGGATG-2278_B05, GTTTATCTCTACTAAG-2278_B05, TTTGGTGCATTGACAT-2278_B05, CCACAATAGGTGCTGC-2278_B05, TATGACTCAGGCAAGC-2278_B05 (top 5 of 5116 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
205,924,413
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 205924413
chr1 18272904
chr2 16000926
chr3 13274791
chr4 10643807
chr5 11350135
chr6 11360862
chr7 10781422
chr8 9372102
chr9 8596056
chr10 9597319
chr11 10834305
chr12 9898809
chr13 5656048
chr14 6812298
chr15 6378304
chr16 7592901
chr17 8955455
chr18 4713992
chr19 7834995
chr20 5473275
chr21 2476243
chr22 4271731
chrX 5711062
chrY 17471
GL000009.2 1149
GL000194.1 7675
GL000195.1 7296
GL000205.2 12081
GL000213.1 153
GL000218.1 2059
GL000219.1 9406
KI270711.1 394
KI270713.1 2928
KI270721.1 279
KI270726.1 25
KI270727.1 579
KI270728.1 2385
KI270731.1 321
KI270734.1 470

Fragment lengths

fragments min max mean median
fragments 205924413 1 5035 166.9 140
global fragment-length histogram

Files

Filename Size md5
8b4e238e60991e024a04d38292e487c475cb6cef.gz 1.98 GB 55da0dc0fe24da288b482b1840a516de
8b4e238e60991e024a04d38292e487c475cb6cef.gz.tbi 1.06 MB 0ee59e2c27c9f438b976075e513a6958
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 2bb817cfedea10dc48c27c644b16019a
statistics/