Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/8c3d4596be432e469850d9c58cc8826666399652content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 8c3d4596be432e469850d9c58cc8826666399652
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 8c3d4596be432e469850d9c58cc8826666399652
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2271_A08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AATCAGGAGGAGCACG-2271_A08, ATTCATGAGCGCCTAA-2271_A08, CTAACCACAAGGTAAC-2271_A08, AAAGGAGCACTTCATC-2271_A08, CGGGTATGTTACCTGT-2271_A08 (top 5 of 3514 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
256,318,075
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 256318075
chr1 22629485
chr2 19763984
chr3 16414230
chr4 13060564
chr5 13852750
chr6 14094586
chr7 13569446
chr8 11498605
chr9 10668229
chr10 11859700
chr11 13608427
chr12 12542095
chr13 6863201
chr14 8617601
chr15 7991342
chr16 9712823
chr17 11349987
chr18 5855718
chr19 10156547
chr20 6877885
chr21 3070162
chr22 5510967
chrX 6671998
chrY 17888
GL000009.2 1239
GL000194.1 10491
GL000195.1 8441
GL000205.2 15446
GL000213.1 180
GL000218.1 2534
GL000219.1 12814
KI270711.1 421
KI270713.1 3699
KI270721.1 282
KI270726.1 36
KI270727.1 648
KI270728.1 2765
KI270731.1 359
KI270734.1 500

Fragment lengths

fragments min max mean median
fragments 256318075 1 5040 176.6 156
global fragment-length histogram

Files

Filename Size md5
8c3d4596be432e469850d9c58cc8826666399652.gz 2.36 GB 4b5dfb1f90378767948071eb14b01796
8c3d4596be432e469850d9c58cc8826666399652.gz.tbi 1.15 MB f984be05ef61a92a3f224ac45b30127b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB fe24b69138d481a33d87163ae2627bab
statistics/